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Publications
For the most up-to-date list of publications, please visit Google Scholar

* = co-first authors, __ = Gregory Lab members, † = co-corresponding authors

 

Probiotic-mediated modulation of gut microbiome in students exposed to academic stress: a randomized controlled trial.

Vázquez-Castellanos JF, Maciel LF, Wauters L, Gregory A, Van Oudenhove L, Geboers K, Verbeke K, Smokvina T, Tack J, Vanuytsel T, Derrien M, Raes J.

npj Biofilms and Microbiomes, 11.1, 140.

Microbial solutions must be deployed against climate catastrophe.

Peixoto R, Voolstra CR, Stein LY, Hugenholtz P, Salles JF, Amin SA, Häggblom M, Gregory A, Makhalanyane TP, Wang F, Agbodjato NA, Wang Y, Jiao N, Lennon JT, Ventosa A, Bavoil PM, Miller V, Gilbert JA

FEMS Microbiology Ecology, 100.11, fiae144. (co-published across 14 journals)

Ocean-wide comparisons of mesopelagic planktonic community structures.

Rigonato J, …[6 authors]…, Gregory AC, …[27 authors]…, Olivier Jaillon.

ISME Communications. 3, 83.

Long-term life history predicts current gut microbiome in a population-based cohort study.

Si J, Vázquez-Castellanos JF, Gregory AC, Decommer L, Rymenans L, Proost S, Kiechl S, Tilg H, Raes J.

Nature Aging. 77, 885.

Postdoctoral life in a pandemic.

Gregory AC.

Nature Microbiology. 7, 741.

MetaPop: a pipeline for macro- and micro- diversity analyses and visualization of microbial and viral metagenome-derived populations.

Gregory AC*, Gerhardt K*, Zhong Z, Bolduc B, Temperton B, Konstantinidis KT, Sullivan MB.

Microbiome. 10, 49.

Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host.

Lloréns-Rico V, Gregory AC, …[13 authors], Raes J.

Nature Communications. 12, 1-12.

efam: an expanded, metaproteome-supported HMM profile database of viral protein families.

Zayed AA, Lücking D, Mohssen M, Cronin D, Bolduc B, Gregory AC, Hargreaves KR, Piehowski PD, White RA, Huang EL, Adkins JN, Roux S, Moraru C, Sullivan MB.

Bioinformatics. 37, 4202-4208.

The Gut Virome Database reveals age-dependent patterns of virome diversity in the human gut.

Gregory AC*, Zablocki O*, Zayed AA, Howell A, Bolduc Benjamin, Sullivan MB.

Cell Host & Microbe. 28, 724-740.

Gene expression changes and community turnover differentially shape the global ocean metatranscriptome.

Salazar G*, Paoli L*,… [8 authors]…, Gregory AC, … [32 authors]…, Sunagawa S.

Cell. 179, 1068-1083.

Marine viral macro- and micro-diversity from pole to pole.

Gregory AC*, Zayed AA*,… [29 authors]…, Sullivan MB.

Cell. 117, 1109-1123.

Global trends in marine plankton diversity across kingdoms of life.

Ibarbalz FM*,… [8 authors]…, Gregory AC, … [35 authors]…, Bowler C, Zinger L.

Cell. 179, 1084-1097.​

Synthetic ecology of the human gut microbiota.

Vrancken G*, Gregory AC*, Huys GRB, Faust K, Raes J. 

Nature Reviews Microbiology. 17, 754-763.

Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters.

Gazitúa MC, Vik D, Roux S, Gregory AC, Bolduc B, Hallam SJ, Ward BB, Ulloa O, Sullivan MB.

The ISME J. 15, 981-998.

Smoking drives quantifiable differences in the human DNA lung virome and metabolome.

Gregory AC, Sullivan MB, Segal LN, Keller BC.

Respiratory Research. 19,174.

Microbiota transfer alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

Kang D-W*, Adams JB*, Gregory AC*,…[10 authors]…, Sullivan MB, Caporaso J.G., Krajmalnik-Brown R. M.

Microbiome. 5,10.

Patterns and ecological drives of ocean viral communities.

Brum JR*, Ignacio-Espinoza JC*, Roux S*, …[8 authors]…, Gregory AC, … [19 authors]…,Sullivan MB.

Science. 348, 1261498.

Viral tagging reveals discrete population structure in Synechococcus viral genome space.

Deng L*, Ignacio-Espinoza JC*, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB.

Nature. 511: 1476-4687.

Ontogenetic variation in epibiont community structure in the deep-sea yeti crab, Kiwa puravida: Convergence among crustaceans.

Goffredi SK, Gregory A, Jones WJ, Morella NM, Sakamoto RI.

Molecular Ecology. Special Issue: Nature’s Microbiome,1-16.

Contrasting strategies of viruses that infect photo- and hetero- trophic bacteria revealed by viral-tagging

Deng L, Gregory A, Yilmaz S, Poulos BT, Hugenholtz P, Sullivan MB.

mBio. 3, e00373-12.

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer.

Gregory AC, Solonenko SA, Ignacio-Espinoza JC, LaButti K, Copeland A, Sudek S,  Maitland A, Chittick L, dos Santos F, Weitz JS, Worden AZ, Woyke T, Sullivan MB.

BMC Genomics. 17, 930. 

©2023 by Ann Gregory

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